Surveillance platform for SARS-CoV-2 in Halle (Saale)

Welcome to the SARS-CoV-2 surveillance platform of the Medical Faculty of the Martin Luther University of Halle-Wittenberg.
These programs present data resulting from SARS-CoV-2 whole genome sequencing from samples collected in Halle (Saale). The programs are devided into three categories: Lineages, Mutations and Custom data.

number of sequenced samples

Mutations Custom data

Development of lineages

Show development of particular virus lineages in selected period of time

SNV frequencies

Show mutation frequencies along the SARS-CoV-2 genome

Get mutations in a given sequence

Get mutations between a given SARS-CoV-2 genome sequence and the reference genome (RefSeq NC_045512.2)

Distribution of lineages

Show distribution of virus lineages at particular times

Distribution of SNVs

Show distribution of point mutation types

Top mutations

Show most frequent mutations in a given time interval