Martin Luther University Halle-Wittenberg

Medical Faculty

NGS-info offers several R Shiny web applications to visualize and summarize different expression datasets. This includes private and public data. There is also the option to upload your own data and visualize it.

Tools

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  Create heatmap

  Allows you to create a heatmap based on your own data. The options are comma separated tables (csv) or tab separated (tsv) tables.

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  Create shRNA

  Allows you to create a shRNA based on data from broadinstitute.

Private data

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  Baseline miRNA Expression (cell lines)

  miRNA expressions can be displayed for single or multiple genes.

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  Baseline RNA Expression (cell lines)

  RNA expressions can be displayed for single or multiple genes.

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  RNA Half-lives

  Half lives of genes in different cell lines.

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  Expression changes

  Shows the RNA expression of several genes.

Public data

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  RNA Expression Mouse Development (ENCODE)

  Shows the expressions of genes in mice in two embryonic states and at birth.

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  Hazard Ratios High vs Low (TCGA)

  Shows the TCGA hazard ratios of selected genes.